Question: KOG functional Enrichment Across Phylogeny given a list of terms for each node on tree
gravatar for moranr
3.4 years ago by
moranr270 wrote:


I have a phylogenetic tree. At each node of the tree I have a list of genes that are important at this node. I also have the KOG function for each gene at each node. I have categorised each funciton into 4 major pathways and 1 unassigned category. I would like to know if there is an existing way to implement an enrichment analysis of these KOG terms for each node of the tree and/or for specific clades on the tree.

Preferably using python.

Thanks, R

python phlyogenetic enrichment • 1.1k views
ADD COMMENTlink written 3.4 years ago by moranr270
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1327 users visited in the last hour