Question: KOG functional Enrichment Across Phylogeny given a list of terms for each node on tree
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gravatar for moranr
2.4 years ago by
moranr250
Ireland
moranr250 wrote:

HI,

I have a phylogenetic tree. At each node of the tree I have a list of genes that are important at this node. I also have the KOG function for each gene at each node. I have categorised each funciton into 4 major pathways and 1 unassigned category. I would like to know if there is an existing way to implement an enrichment analysis of these KOG terms for each node of the tree and/or for specific clades on the tree.

Preferably using python.

Thanks, R

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