Hi, I have three de novo assemblies (with predicted genes and their annotations) of three differents biotypes from a same specie of fungus. There is no reference genome, so I don't know how many chromossomes exists. I found some assemblies from related species, but there is no mention to chromossomes too.
I want to make a visual genomic comparation, so I started to read and study about the Circos.
Is possible to make a visual comparation without a genome reference? I want to demonstrate the difference between the 3 biotypes.