Question: Functional annotation of unigenes
0
gravatar for Mehmet
2.0 years ago by
Mehmet440
Japan
Mehmet440 wrote:

Dear All:

I have a set of unigenes (~30.000). I want to use blastx for searching the unigenes against to non redundant, swissprot, and COG (cluster of ortho groups). Then, I want to use results in blast2go program for annotation. How can I search against to the databases?

Thank you.

blast sequence gene • 713 views
ADD COMMENTlink modified 2.0 years ago by apa@stowers380 • written 2.0 years ago by Mehmet440
1
gravatar for seta
2.0 years ago by
seta1.1k
Sweden
seta1.1k wrote:

You can download the database of interest and NCBI-blast program and conduct locally blastx on the server.

ADD COMMENTlink written 2.0 years ago by seta1.1k
0
gravatar for apa@stowers
2.0 years ago by
apa@stowers380
Kansas City
apa@stowers380 wrote:

Web interface for NCBI blast

Web interface for NCBI CDD blast (for COGs)

Blast2Go download page

ADD COMMENTlink written 2.0 years ago by apa@stowers380
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