PASTEC repeat classification software (part of REPET) help needed
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4.9 years ago
mcsimenc ▴ 10

I am trying to use PASTEC with my genomes on a cluster running TORQUE.

The program's version of parallelization is splitting the input sequences in to batches and submitting many individual jobs to the cluster. I have not figured out how to (1) limit the number of jobs submitted or (2) increase the size of each batch, and when I run PASTEC it submits tens of thousands of jobs to the cluster simultaneously and crashes the server, which causes PASTEC to abort.

Does anyone have experience with this tool? I could use some help! Thanks! Matt

repeat classification repet pastec parallel torque • 1.3k views

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