Entering edit mode
7.3 years ago
mcsimenc
▴
20
I am trying to use PASTEC with my genomes on a cluster running TORQUE.
The program's version of parallelization is splitting the input sequences in to batches and submitting many individual jobs to the cluster. I have not figured out how to (1) limit the number of jobs submitted or (2) increase the size of each batch, and when I run PASTEC it submits tens of thousands of jobs to the cluster simultaneously and crashes the server, which causes PASTEC to abort.
Does anyone have experience with this tool? I could use some help! Thanks! Matt
