Question: converting 's output of Gene-exon ID to Transcript Id
gravatar for Ice P
2.2 years ago by
Ice P0
United States
Ice P0 wrote:

For my analysis using DEXSEQ, firstly I used following command to generate a GFF file: ../Mus_musculus/Ensembl/NCBIM37/Annotation/Genes/genes.gtf Mus_musculus.NCBIM37.DEXSeq.chr.gff

then i obtained a count file by running

this returned a text output as:

ENSMUSG00000000058:005 30

ENSMUSG00000000058:006 414

ENSMUSG00000000058:007 801

ENSMUSG00000000078:001 450

ENSMUSG00000000078:002 1385

ENSMUSG00000000078:003 645

My question is,

Is there a way I could map these exon files (ENMUSG:001) to their corresponding transcript ID (ENSMUST)?


Is it possible to get the output in form of ENSMUSE* instead of ENMUSG:001 etc. Then I can use biomart to map them.

ADD COMMENTlink written 2.2 years ago by Ice P0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2524 users visited in the last hour