Hi everybody, I am trying STAR+StringTie. I have done the alignment with STAR and included the option ''--outSAMstrandField intronMotif'' while running STAR to get spliced alignments with XS strand attribute. However, when I run Stringtie I receive this error: input file stringtie cannot be found! Has anybody had the same problem or do you have an idea what I can do???
Thanks in advance. Fatima