I have a question about how to combine multiple genomes from different rice species to one genome. These rice species have close genetic relationship. I knon this question sounds weird, but I really want to find ways to combine these genomes.
At first glance of this question, I will blast A genome sequence with B genome. According the blast result, the unmatch sequence may be different with B genome and insert these unmatch sequences in A genome. But I don't know the insert position. This is a simple idea in my mind now. I would be very grateful if you can give me some suggestions.