Question: How to Download RNAseq-Clinical Follow up data of BRCA
0
gravatar for rbaranikumar
5 weeks ago by
rbaranikumar0 wrote:

Dear All, I want to access the Brest cancer RNA sequence-clinical follow up data, please assist me to download and analyze the data. Thanks in advance...

sequencing rna-seq gene • 136 views
ADD COMMENTlink modified 5 weeks ago by sysbiocoder150 • written 5 weeks ago by rbaranikumar0

If you are asking for the TCGA dataset you can access it using FireBrowse RESTful API.

ADD REPLYlink written 5 weeks ago by arup0
1
gravatar for sysbiocoder
5 weeks ago by
sysbiocoder150
sysbiocoder150 wrote:

Are you talking about TCGA, then you can get from https://gdc-portal.nci.nih.gov/.

ADD COMMENTlink written 5 weeks ago by sysbiocoder150

Thanks for your valuable reply. But gdc portal having access restriction. We need to register for access. I am afraid is it easy to access controlled data? Thanks in advance.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by rbaranikumar0

TCGA has both open access and controlled access data To get controlled access data you have to request permission https://dbgap.ncbi.nlm.nih.gov/aa/dbgap_request_process.pdf

ADD REPLYlink written 4 weeks ago by sysbiocoder150
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