Question: How to Download RNAseq-Clinical Follow up data of BRCA
0
gravatar for rbaranikumar
10 weeks ago by
rbaranikumar0 wrote:

Dear All, I want to access the Brest cancer RNA sequence-clinical follow up data, please assist me to download and analyze the data. Thanks in advance...

sequencing rna-seq gene • 155 views
ADD COMMENTlink modified 10 weeks ago by sysbiocoder150 • written 10 weeks ago by rbaranikumar0

If you are asking for the TCGA dataset you can access it using FireBrowse RESTful API.

ADD REPLYlink written 10 weeks ago by arup0
1
gravatar for sysbiocoder
10 weeks ago by
sysbiocoder150
sysbiocoder150 wrote:

Are you talking about TCGA, then you can get from https://gdc-portal.nci.nih.gov/.

ADD COMMENTlink written 10 weeks ago by sysbiocoder150

Thanks for your valuable reply. But gdc portal having access restriction. We need to register for access. I am afraid is it easy to access controlled data? Thanks in advance.

ADD REPLYlink modified 10 weeks ago • written 10 weeks ago by rbaranikumar0

TCGA has both open access and controlled access data To get controlled access data you have to request permission https://dbgap.ncbi.nlm.nih.gov/aa/dbgap_request_process.pdf

ADD REPLYlink written 9 weeks ago by sysbiocoder150
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1531 users visited in the last hour