Does anyone have a good workflow for detecting cycling peaks in ATAC/CHIP-seq data? I'm relatively new to the analysis of ATAC data, but it was suggested to me to use Metacycle and I was wondering others thoughts.
You can read this paper (http://www.nature.com/nature/journal/v534/n7609/full/nature18606.html), the methods are talking about how to call peaks.
That link is broken....could we get the title please?
Remove the ) at the end of the link. Anyway, title is "The landscape of accessible chromatin in mammalian preimplantation embryos", Wu et al.