Forum: Segmentation method comparisons: HMM, CBS, RS
1
gravatar for Shicheng Guo
2.3 years ago by
Shicheng Guo7.4k
Shicheng Guo7.4k wrote:

Hi All,

Segmentation processing is quite important in CNV and DMR analysis. However, is there any paper to compare the power for the difference methods? How many Segmentation method could be applied? I only know HMM, CBS, Rank Segmentation, is there any other popular methods?

Regards,

segmentation cbs forum hmm rank • 896 views
ADD COMMENTlink modified 2.3 years ago by Aerval280 • written 2.3 years ago by Shicheng Guo7.4k
1
gravatar for Aerval
2.3 years ago by
Aerval280
Germany
Aerval280 wrote:

Well, DSS only looks for consecutive CpGs which reach a certain p-value, though thats also a HMM to some degree.

The review I have most of my information from is Robinoson et al. 2014: (Statistical methods for detecting differentially methylated loci and regions). If you have more I would also be interested.

ADD COMMENTlink written 2.3 years ago by Aerval280
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