generate oncoprint from input VCF file
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7.4 years ago
shu2010 ▴ 20

Hi, Are there any packages to visualise the variants as a oncoprint from input VCF files? More specifically, I have a joint called, VEP annotated VCF file or GVCF file from germline samples. I intend to convert the GVCF file into MAF format(for visualisation) using the VCF2MAF package and not sure if it is up for the task? Appreciate any help/suggestions !! Thanks Shu

next-gen vcf2maf oncoprint • 2.8k views
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Maybe one can try Vcf2maf https://github.com/mskcc/vcf2maf

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Any update to the problem?

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