Question: Radius of Gyration via PDBParser
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gravatar for Oldeuboi
2.2 years ago by
Oldeuboi0
Turkey
Oldeuboi0 wrote:

Hi, I study Bioinformatics and I'm really new at this. I want to write a code that includes Radius of Gyration. But, i have to use only PDBParser. I have the .pdb files, i wrote the start of it, but i need help for the rest.

from Bio.PDB.PDBParser import PDBParser p=PDBParser() structure=p.get_structure('1enh', '1enh.pdb')

for model in structure: for chain in model: for residue in chain: for atom in residue: a = list(atom.get_coord())

The problem for me in here is how to get list of "CA" atoms. Also need to write a function i guess. If someone can help it would be awesome. Thank you.

rna-seq • 720 views
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