Question: CrossMap lift over bed but not the same vcf file
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gravatar for Medhat
3.8 years ago by
Medhat8.8k
Texas
Medhat8.8k wrote:

Trying to see what is happening from the previous post CrossMap liftover failed

I downloaded a vcf file from ftp://ftp.ensemblgenomes.org/pub/plants/release-31/vcf/zea_mays/zea_mays.vcf.gz and try to lift it over using CrossMap also it did not work
But when I convert the vcf file to bed file first using vcf2bed from bedops package and the I lift it over using CrossMap it worked !!

any suggestion here? or explanation for this behavior

snp sequence bed vcf • 1.2k views
ADD COMMENTlink written 3.8 years ago by Medhat8.8k
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