Entering edit mode
7.3 years ago
Medhat
9.7k
Trying to see what is happening from the previous post CrossMap liftover failed
I downloaded a vcf file from ftp://ftp.ensemblgenomes.org/pub/plants/release-31/vcf/zea_mays/zea_mays.vcf.gz
and try to lift it over using CrossMap also it did not work
But when I convert the vcf file to bed file first using vcf2bed from bedops package and the I lift it over using CrossMap it worked !!
any suggestion here? or explanation for this behavior