I want to make 3d PCA plot with 2 components from RNA-Seq data.
Refer following link for reference: https://postimg.org/image/gvvkpj0xl/
I want to make exactly same plot using RNA-Seq data.
Cubemaker might be a quick way to deal with this. It was originally developed for PCA components, but can plot any 3D numerical dataset.
I have seen your tool Cubemaker , it really interesting. But, I have few questions specific to cubemaker, where shall I post those ..looking for a forum or a mail id for direct questions.
You could post your questions in that thread, if that works.
For 3D plots in R, have a look at scatter3d() in the car package, the scatterplot3d package, the plot3D package or the rgl package. You'll find introductions to these packages here.
I really like plotly which has APIs in R and Python for making interactive 3d plots