Question: 3D PCA Plot from RNA-Seq data
1
gravatar for ####
4.1 years ago by
####210
####210 wrote:

I want to make 3d PCA plot with 2 components from RNA-Seq data.

3D Plot Refer following link for reference: https://postimg.org/image/gvvkpj0xl/

I want to make exactly same plot using RNA-Seq data.

plot rna-seq • 3.5k views
ADD COMMENTlink modified 4.1 years ago by Joe18k • written 4.1 years ago by ####210

Cubemaker might be a quick way to deal with this. It was originally developed for PCA components, but can plot any 3D numerical dataset.

ADD REPLYlink modified 4.1 years ago • written 4.1 years ago by Alex Reynolds31k

I have seen your tool Cubemaker , it really interesting. But, I have few questions specific to cubemaker, where shall I post those ..looking for a forum or a mail id for direct questions.

ADD REPLYlink written 4.1 years ago by ####210

You could post your questions in that thread, if that works.

ADD REPLYlink written 4.1 years ago by Alex Reynolds31k
1
gravatar for Jean-Karim Heriche
4.1 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche24k wrote:

For 3D plots in R, have a look at scatter3d() in the car package, the scatterplot3d package, the plot3D package or the rgl package. You'll find introductions to these packages here.

ADD COMMENTlink written 4.1 years ago by Jean-Karim Heriche24k
1
gravatar for Joe
4.1 years ago by
Joe18k
United Kingdom
Joe18k wrote:

I really like plotly which has APIs in R and Python for making interactive 3d plots

ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by Joe18k
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