combine multiple fasta sequences
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7.3 years ago
a.moner • 0

Hi I have sequences like this

abc.ff ccgtac

qwe.oo aattcg

dee.ff aatt

rte.oo ttcc

and I want to be like this

ff ccgtacaatt

oo aattcgttcc

can you tell me how to do it thsanks

alignment genome sequence • 1.2k views
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I don't really understand what you are trying to do, can you elaborate?
In addition, it's convenient to show us (an example) of the data you have and an example of the data you wish to obtain.

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Hi It is complicated a little bit I have file A has genes sequence from chromosome 1(refrence) File B has full sequence of chromosome 1 (sample) What I did is aligne sample to the reference to get these genes for the sample The results is getting the full genes which aligned to the reference genes My question is how to get the exons only from these genes

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Have you looked at bedtools intersect?

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