How can I get Tabular output using HMMer
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7.3 years ago
2351688559 ▴ 20

Dear all, I want to use HMMer to search some sequences and I want a tabular output. The user guide told me to add "--tblout" within the command, and I did it, then, I got this result:

Incorrect number of command line arguments. Usage: phmmer [-options] <seqfile> <seqdb>

where basic options are: -h : show brief help on version and usage

To see more help on available options, do phmmer -h

I did many attempts, but got the same result. Hope anyone can help me. Thank you!

HMMer • 2.9k views
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The message indicates that you're missing something on your command line. Did you specify an output file after --tblout i.e. --tblout /path/to/output/file ?

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Ok, I got the idea. Many thanks.

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