Question: How can I get Tabular output using HMMer
gravatar for 2351688559
21 months ago by
235168855910 wrote:

Dear all, I want to use HMMer to search some sequences and I want a tabular output. The user guide told me to add "--tblout" within the command, and I did it, then, I got this result:

Incorrect number of command line arguments. Usage: phmmer [-options] <seqfile> <seqdb>

where basic options are: -h : show brief help on version and usage

To see more help on available options, do phmmer -h

I did many attempts, but got the same result. Hope anyone can help me. Thank you!

hmmer • 520 views
ADD COMMENTlink written 21 months ago by 235168855910

The message indicates that you're missing something on your command line. Did you specify an output file after --tblout i.e. --tblout /path/to/output/file ?

ADD REPLYlink written 21 months ago by Jean-Karim Heriche16k

Ok, I got the idea. Many thanks.

ADD REPLYlink written 21 months ago by 235168855910
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