Question: How can I get Tabular output using HMMer
gravatar for 2351688559
12 months ago by
235168855910 wrote:

Dear all, I want to use HMMer to search some sequences and I want a tabular output. The user guide told me to add "--tblout" within the command, and I did it, then, I got this result:

Incorrect number of command line arguments. Usage: phmmer [-options] <seqfile> <seqdb>

where basic options are: -h : show brief help on version and usage

To see more help on available options, do phmmer -h

I did many attempts, but got the same result. Hope anyone can help me. Thank you!

hmmer • 292 views
ADD COMMENTlink written 12 months ago by 235168855910

The message indicates that you're missing something on your command line. Did you specify an output file after --tblout i.e. --tblout /path/to/output/file ?

ADD REPLYlink written 12 months ago by Jean-Karim Heriche14k

Ok, I got the idea. Many thanks.

ADD REPLYlink written 12 months ago by 235168855910
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1317 users visited in the last hour