Question: How to download pfam database
0
gravatar for Sanchita
15 months ago by
Sanchita30
Sanchita30 wrote:

Hello all

How can we download all the RNAs sequences from ftp of pfam database.

sequence • 2.2k views
ADD COMMENTlink modified 15 months ago by Medhat7.5k • written 15 months ago by Sanchita30

RNAs from a protein family database? Are you sure you don't mean Rfam?

ADD REPLYlink written 15 months ago by 5heikki7.2k

I think you mean Rfam if so wget ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.1/Rfam.full_region.gz

for different release go to Rfam

and from here you can get the fasta file ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.1/fasta_files/


and if you really needs Pfam wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam30.0/Pfam-A.full.gz

for different release or db go to Pfam

ADD REPLYlink written 15 months ago by Medhat7.5k
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