How to download pfam database

Question

[Sanchita Gupta]

Hello all

How can we download all the RNAs sequences from ftp of pfam database.

[5heikki]

RNAs from a protein family database? Are you sure you don't mean Rfam?

[Medhat]

I think you mean Rfam if so wget ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.1/Rfam.full_region.gz

for different release go to Rfam

and from here you can get the fasta file ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.1/fasta_files/

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and if you really needs Pfam wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam30.0/Pfam-A.full.gz

for different release or db go to Pfam