Question: Error from running Abyss on local Galaxy
0
gravatar for artteristic
2.8 years ago by
artteristic0 wrote:

Hi there, I am trying to assemble the reads using Abyss on local Galaxy. I used .fastq file and followed the default option for paired-end. Just a moment after submitted, I got the errors:

Fatal error: Exit code 127 () /home/computer/NGS/galaxy/database/jobs_directory/000/4/tool_script.sh: line 9: ABYSS: command not found /home/computer/NGS/galaxy/database/jobs_directory/000/4/tool_script.sh: line 9: abyss-pe: command not found

Were there something wrong with the installation or setting? Please help. Thank you very much .

assembly • 808 views
ADD COMMENTlink written 2.8 years ago by artteristic0
1

Looks like ABYSS is not correctly installed on your local machine under galaxy. Are you the admin or someone else? Did you install it from the toolshade?

You may want to post this over at galaxy biostars site.

ADD REPLYlink modified 2.8 years ago • written 2.8 years ago by genomax73k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1894 users visited in the last hour