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6.4 years ago
fatima.m.zare ▴ 30
I want to remove mappability bias from my data (bam file) and so I should calculate mappability score first. Actually I want to have windows with size 100bp. Is there any way to calculate mappability score for each window?
Which genome? You can download mappability tracks from UCSC for some species.
I am using human genome (hg19). can I generate by myself instead of using USCS?