Question: PAML(codeml) reading sequences EOF
gravatar for Feng
4.1 years ago by
Feng0 wrote:

Hi all,

I was trying to use PAML (codeml) to calculate dn/ds i converted aligned fasta file to phylip format. but it keeps giving me error. so my output mlc is empty. I pasted the error as below, does anyone know why? thank you!

ns = 7 ls = 22105 Reading sequences, sequential format.. Reading seq # 7: TGCGAGTAAACTCGCCATTCTGCCCCCCATCGACTTGCCACCAATGACCA
EOF at site 21756, seq 7

alignment sequence • 1.9k views
ADD COMMENTlink modified 8 months ago by Biostar ♦♦ 20 • written 4.1 years ago by Feng0

Could it be a windows/unix issue? If you work in linux and edited the file in windows you might try using dos2unix

ADD REPLYlink written 4.1 years ago by Fabio Marroni2.7k
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