I was trying to use PAML (codeml) to calculate dn/ds i converted aligned fasta file to phylip format. but it keeps giving me error. so my output mlc is empty. I pasted the error as below, does anyone know why? thank you!
ns = 7 ls = 22105
Reading sequences, sequential format..
Reading seq # 7: TGCGAGTAAACTCGCCATTCTGCCCCCCATCGACTTGCCACCAATGACCA
EOF at site 21756, seq 7