multi vcf population genomics analysis

Question

[guillaume.rbt]

Hi all,

I have done an indel and SNPs calling on multiple strains of a fungus, with WGS data.

I have now a multi vcf file, and I would like to do population genomics oriented analysis with that.

Would anyone advise me some tools to perform those kind of analysis?

Thanks,

Guillaume

[Medhat]

A Workflow Of Population Genomic Operations/Analysis For Newcomers