Question: using gmap to find tss and tes in genome file.
gravatar for a.rex
3.1 years ago by
a.rex200 wrote:

I wish to annotate my genome of interest with TES's and TSS's. Is the best way to do this to use gmap to map my transcriptome to the genome? What sort of output can I expect from gmap and can I parse this easily to get the TSS's and TES's?

ADD COMMENTlink modified 20 months ago by Biostar ♦♦ 20 • written 3.1 years ago by a.rex200

It's unclear which data you have for mapping using gmap. Gmap can give you a sam file output, optionally junction files and perhaps more specific output with regard to your analysis, but for that I would suggest you to Read The Fantastic Manual.

ADD REPLYlink written 3.1 years ago by WouterDeCoster43k
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