How to install SAMTools and Gatk on CygWin and how to call it from Window`s Python and Java?
0
0
Entering edit mode
7.2 years ago
flight22121 ▴ 10

How to install SAMTools and Gatk on CygWin and how to call it from Window`s Python and Java?
samtools gatk cygwin • 2.6k views
ADD COMMENT •
3
Entering edit mode

I don't know anything about cygwin (except that many people have trouble getting stuff working on it), but I do know that if you could get access to a Linux machine (server, virtual box, dual boot, standard installation) things would get far easier for you.

ADD REPLY •
1
Entering edit mode

Even though you set running environment well, you really want to use samtools or GATK to call big bam data on your Windows?

ADD REPLY •
0
Entering edit mode

Re samtools, just compile the source code. I haven't used GATK on cygwin

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 3131 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6