Question: Convert transcript position to genomic position
gravatar for aaaa
3.8 years ago by
aaaa10 wrote:

Hi, I'm a newbie in bioinformatics, maybe this question was already answered somewhere else. I'm working on tobacco samples and I've already predicted miRNA cleavage positions to a reference transcriptome. Now, I want to convert these transcript positions to genomic positions. So for example:

On gene X, I have a predicted cleavage position at 1539nt from the first base of the 5'UTR. This position on the corresponding scaffold is 2369875.

Is there any easy-to-use tool which can use gff/gtf file to "map" these coordinates?

Any help will be very useful!

Thank you,


transcriptome rna-seq mirna • 1.3k views
ADD COMMENTlink written 3.8 years ago by aaaa10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1176 users visited in the last hour