I am working with RNA Seq data analysis. I have to download MSU7 rice genome. somehow i downloaded from (http://rice.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_7.0/all.dir/) But i am not able to find Annotation (.gtf) file and reference genome (.fa) file . so how can i find and how can i download. Another question is how to define (--frag-len-mean 262 --frag-len-std-dev 80 ) these two things for oryza sativa (how much i need to give mean and std-dev). help me
Question: where i can download reference MSU7 rice genome?
3.4 years ago by
barrypraveen • 30
barrypraveen • 30 wrote:
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