bwtool Alternative tool
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7.2 years ago
rbronste ▴ 420

Looking for a tool that will count DNase cutting events in windows centered around motif occurrences in the genome. Have those occurrences as outputs from Fimo in a GTF file. Please let me know if you guys have any thoughts. Thanks!
ChIP-Seq bwtool DNase-seq • 1.4k views
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computeMatrix and/or bamCoverage from deepTools presumably, depending on the exact nature of the data.

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Do not post the same questions multiple times. If you want additional information, post questions in your original thread.

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