Question: What software can better substitute SNPEff for the tuberculosis whole genome annotation?
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2.2 years ago by
human_genomeXXX10 wrote:

What software can better substitute SNPEff for the tuberculosis whole genome annotation?

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by human_genomeXXX10
1

Maybe VEP? http://www.ensembl.org/info/docs/tools/vep/index.html

ADD REPLYlink written 2.2 years ago by cschu1811.6k

If I'm not mistaken SNPEff is (only) for variant annotation. What type of genome annotation would you like to do? Annotation is a quite broad term...

ADD REPLYlink written 2.2 years ago by WouterDeCoster38k

I have a Pilon, VarScan and BBMap different .snp and .vcf outputs. Need to annotate them (separately) to see a human readable report with gene names and statistical situation printed out. Thank you.

ADD REPLYlink written 2.2 years ago by human_genomeXXX10

Maybe VEP? http://www.ensembl.org/info/docs/tools/vep/index.html

ADD REPLYlink written 2.2 years ago by WouterDeCoster38k
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