Diamond sequence description
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5.5 years ago
hlwalsh • 0

I am trying to make a database using the software Diamond and I was wondering if in addition to the accession number could the sequence description also be added to the output? I have tried using both the blast tabular format and sam format and it does not produce the results I want (ex. NP_957226.1 5'-nucleotidase precursor [Danio rerio]). Thanks for your help.

RNA-Seq annotation • 1.6k views
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5.5 years ago
buchfink ▴ 240

You can use this command line option for showing the full subject title (more details are in the manual): -f 6 qseqid stitle pident length mismatch gapopen qstart qend sstart send evalue bitscore

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Is there also a way to set the transcripts to sense if they are antisense?

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5.5 years ago
hlwalsh • 0

Thank you! This worked.

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