Diamond sequence description
2
0
Entering edit mode
5.5 years ago
hlwalsh • 0

I am trying to make a database using the software Diamond and I was wondering if in addition to the accession number could the sequence description also be added to the output? I have tried using both the blast tabular format and sam format and it does not produce the results I want (ex. NP_957226.1 5'-nucleotidase precursor [Danio rerio]). Thanks for your help.

RNA-Seq annotation • 1.6k views
ADD COMMENT
2
Entering edit mode
5.5 years ago
buchfink ▴ 240

You can use this command line option for showing the full subject title (more details are in the manual): -f 6 qseqid stitle pident length mismatch gapopen qstart qend sstart send evalue bitscore

ADD COMMENT
0
Entering edit mode

Is there also a way to set the transcripts to sense if they are antisense?

ADD REPLY
0
Entering edit mode
5.5 years ago
hlwalsh • 0

Thank you! This worked.

ADD COMMENT
0
Entering edit mode

Please use ADD COMMENT to reply to earlier answers, as such this thread remains logically structured and easy to follow.

ADD REPLY

Login before adding your answer.

Traffic: 1272 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6