Haploview Aggressive Tagging no output
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6.2 years ago
sidwell ▴ 10

Hi, I'm trying to do an aggressive tagging on 1000G datas with a list of markers

java -jar Haploview.jar -n
-out output
-map chr1.map
-info info_file
-minMAF 0.1
-aggressiveTagging
-includeTagsFile list_markers.txt
-tagrsqcutoff 0.7


I don't have any error when I execute the command but I don't have any output file created neither log file. I know it is running because it takes time and if I give a fake file instead of my real files, it returns an error. So I believe it's working but I can't have any output.

Thanks for any help.

Haploview tagging output • 1.4k views
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Did you manage to get the output for the tags? If so, would you mind to share? Thanks