What R packages and Python/java/ruby libraries are in use today for microarray`s ttest, ANOVA and clustering?

Question

[human_genomeXXX]

5 years ago I did it with Limma, MeV, Expander software. Are there any newest modern approaches today for microarray conventional data processing to find out signifcantly expressed genes?

Answer 1

[WouterDeCoster]

Have a look at Using Bioconductor for Microarray Analysis.

You are asking an awful lot of questions. Did you consider doing some research on your own?