Thanks to the help of all from this forum I know how to add the bed files from uniprot to my vcf file
I use this code
bcftools annotate \ -a ACTIV.bed.gz \ -c CHROM,FROM,TO,UNIPROT \ -h <(echo '##INFO=<ID=UNIPROT,Number=1,Type=String,Description="name">') \ sample.vcf.gz > sample_unipPROT.vcf
Easy to do with one file, but I would like to do with all the bed files from uniprot site. So at this point I have few questions...
- The best is to Merge all bed files toguether and annotate afther?
- Can I use bcftools to anotate all in one secuence? 3,Isnt there a bed file to download with all the info together?