Question: Plotting Venn diagram for multiple BED files
0
gravatar for SOHAIL
3.8 years ago by
SOHAIL320
Beijing Institute of Genomics, CAS.
SOHAIL320 wrote:

Hi Everyone,

I have 6 large BED files and i want to draw a Venn diagram for them together. Can anyone please suggest which tool can handle multiple BED files simultaneously??

I have read about pybedtools https://daler.github.io/pybedtools/index.html

But it handles only three files.. Can anyone please share the code or tool?

Thanks!

venn diagram ngs • 3.9k views
ADD COMMENTlink modified 15 months ago by Biostar ♦♦ 20 • written 3.8 years ago by SOHAIL320

Just a brief note that you can't really make a true Venn from more than three sets. Some discussion here: A: How Can I Generate A Venn Diagram In R For A Given Csv File

ADD REPLYlink written 3.8 years ago by Alex Reynolds31k
0
gravatar for ammarsabir15
3.8 years ago by
ammarsabir1560
ammarsabir1560 wrote:

There are mulitple tools for this pupose like the one here.

You can also check this https://www.google.com/search?q=biostar%20venn&rct=j.

ADD COMMENTlink written 3.8 years ago by ammarsabir1560
0
gravatar for reza.jabal
3.8 years ago by
reza.jabal440
New York, USA
reza.jabal440 wrote:

Your question is a kind of extension to this question! Once, you find the intersections you can easily plot the Venn Diagrams in R. If you find a better solution, post it here so it would be useful for future reference.

ADD COMMENTlink written 3.8 years ago by reza.jabal440
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