Question: duplicate gene ids after running toxedo protocol
0
gravatar for Kritika
2.3 years ago by
Kritika260
India
Kritika260 wrote:

Hello All I am runnig tuxedo protocol for my human samples after running the cufflink i am getting the duplicate value of gene id and with different fpkms for example

gene id fpkm_control1 fpkm_control2 fpkm_test1 fpkm_test2

abc 0.88 0.65 0.56 0.1

abc 1 0 0 1

I am not able to understand why this duplicate value are coming in my analysis that too with different fpkm values. please help Thanks

ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 2.3 years ago by Kritika260

Did you check if they are two isoforms of the same gene?

ADD REPLYlink written 2.3 years ago by shunyip180

They are not isoforms

ADD REPLYlink written 2.3 years ago by Kritika260
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