liftOver narrowPeak file
I am wondering how you can use liftOver to convert mm10 narrowPeak files back to mm9? Thanks.
I just stumbled upon this problem, and it turns out the solution is very easy:
The important line here is
-bedPlus=6. This will treat only the first 6 columns in your input file as a BED file. The rest of the columns will just be "carried along for the ride".
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