Does anyone know how to make a GO enrichment diagram like the one in fig 1D of this paper? http://www.sciencedirect.com/science/article/pii/S2211124715006075
Unfortunatley they don't say how the figure was constructed. I've seen a few tools for this, like revigo (http://revigo.irb.hr/) which is ok, but normally ends up with a big mess of confusing bubbles. Ideally I'd like to show all three ontologies (MF, CC + BP) in the same diagram like in the example, but this isnt a feature of any tools that I'm aware of.
If anyone knows what was used to make this figure, or of any other tools that can do this, I would be grateful to hear from you.