Question: Input data for co-expression network by cytoscape
gravatar for Edalat
3.8 years ago by
Edalat30 wrote:


I need help to prepare input data for cytoscape,or recommended tutorial as a sample.

For Co-Expression(Network) Analysis, I calculated correlation by I have coding-non coding pairs correlation for treatment and I want to draw network by cytoscape. I want molecules (genes and lncRNA) as nodes and correlation weighting the edges connecting them. 

should I prepare a table for importing with 6 column? 1-coding genes 2-lncoding 3-pairs of treatment 4-pairs of control 5-value of treatment correlation 6-value of control correlation that the first and second are nodes and others are edges?

ADD COMMENTlink modified 3.8 years ago by Jean-Karim Heriche23k • written 3.8 years ago by Edalat30
gravatar for Jean-Karim Heriche
3.8 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

Cytoscape 3 has a plug-in for reading adjacency matrices.

ADD COMMENTlink written 3.8 years ago by Jean-Karim Heriche23k
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