Question: Where can i download the lncRNA expression profile for Lung adenocarcinoma
0
gravatar for enterid
2.2 years ago by
enterid10
enterid10 wrote:

I would like to compare the difference between the 2 type of lung cancer , adenocarcinoma and squamous cell carcinoma in team of Long non coding RNA (LncRNA) , however, i have no idea where i can freely access the expression profile for adenocarcinoma (tumor sample).

rna-seq • 1.0k views
ADD COMMENTlink modified 2.2 years ago by lsp03yjh750 • written 2.2 years ago by enterid10

What do you mean with expression profile? Are you looking for RNA-seq raw datasets? Try to be as informative and precise as possible when asking questions.

ADD REPLYlink written 2.2 years ago by WouterDeCoster38k
2
gravatar for EagleEye
2.2 years ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:

I assume you are looking for TCGA expression data. You can access expression of all classes of RNAs in Synapse TCGA project. You have to simple login to access more datasets (cancers or TCGA live section).

Lung cancers: LUAD and LUSC

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by EagleEye6.2k

yes , this really help

ADD REPLYlink written 2.2 years ago by enterid10

yes , this really help thank you so much

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by enterid10

sorry I downloaded TCGA_miRNAseq.tar.gz from http://rna.sysu.edu.cn/onconcrna/download.php containing many txt files such as ACC.txt, BLCA.txt, etc. how I know in each file which is control and which cancer sample???

thank you in advance

ADD REPLYlink written 2.1 years ago by F3.4k

sorry I downloaded bcgsc.ca_LUSC_IlluminaHiSeq_miRNASeq from Synapse TCGA project for LAUD but in columns there are sample names TCGA-77-7463-01A-11H-2044-13 TCGA-43-6773-11A-01H-2124-13 TCGA-90-7767-11A-01H-2124-13 TCGA-90-7964-01A-21H-2186-13 TCGA-58-8386-01A-11H-2295-13, etc

how I know which one is for cancer aand which is control samples?

ADD REPLYlink written 2.1 years ago by F3.4k
1
gravatar for lsp03yjh
2.2 years ago by
lsp03yjh750
China
lsp03yjh750 wrote:

You can downloaded all expression values of lncRNAs and protein-coding genes generated by TCGA RNA-seq datasets from oncoNcRNA download page.

ADD COMMENTlink written 2.2 years ago by lsp03yjh750

I was trying this , however , the file size is too big to me to download it without using a server

ADD REPLYlink written 2.2 years ago by enterid10
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