Question: Comparative tramnscriptome analyses and homologous genes
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gravatar for anagreh_l
2.8 years ago by
anagreh_l0
anagreh_l0 wrote:

If I have two transcriptomes of a closely related speceis, these two transcriptomes were mapped and annotated, how can I find the transcripts of homologous genes? which software is the best?

rna-seq • 639 views
ADD COMMENTlink modified 2.8 years ago by theobroma221.1k • written 2.8 years ago by anagreh_l0
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gravatar for theobroma22
2.8 years ago by
theobroma221.1k
theobroma221.1k wrote:

Use a pair wise or multiple sequence alignment tool, like Blast-2. For large datasets like what you have, use the stand alone Blast+ which you can download from NCBI. First read the manual before downloading/installing, and keep it close to you at all times. It's quite efficient.

ADD COMMENTlink written 2.8 years ago by theobroma221.1k
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