Question: (Closed) how to calculate all atom to all atom distances for less than 5 angstrom
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3.3 years ago by
python20
python20 wrote:

how to calculate all atom to all atom distances for less than 5 angstrom i have extract coordinate from following code now what i have to do for calculating all atom to all atom distances for less than 5 angstrom

for model in structure:
    for chain in model:
        for residue in chain:
            for atom in residue:
                print (atom.get_vector(),atom.name)
biopython python • 2.4k views
ADD COMMENTlink modified 3.3 years ago by RamRS27k • written 3.3 years ago by python20

Do you mean "count atom-to-atom distances that are less than 5 Angstrom?"

ADD REPLYlink written 3.3 years ago by RamRS27k

Why have you asked 2 questions that are basically the same question? What was wrong with the help you were getting before?

ADD REPLYlink written 3.3 years ago by Joe16k

Hello python!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.3 years ago by Michael Dondrup47k
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