Question: EventPointer CDF generation
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gravatar for mforde84
3.2 years ago by
mforde841.2k
mforde841.2k wrote:

Hello,

I'm looking to use EventPointer (https://github.com/jpromeror/EventPointer) to assess alternate splicing events on Clariom D human microarray. I've read the documentation and they say that the newer chips will be compatible with the software so long as you can generate a CDF file from the the probe and transcript annotations provided by Affy.

The process to do so is somewhat complex, and I've noticed that Bioconductor already has a packaged CDF available for array as pd.clariom.d.human. I'm wondering if it's possible for me to save some time and convert the package back to a CDF format for use with the EventPointer package?

Thanks, Martin

hta microarray • 907 views
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