Secondary structures of proteins

Question

[suryaram2394]

Hi there.! I have thousands of PDB files and I can't compute those one by one in stride server to get secondary structures of proteins, even i do it will take weeks to finish. So is there any other way to compute collection of PDB files..? if there let help me to overcome this work..

Answer 1

[natasha.sernova]

See these posts and links, they may be useful

http://www.cmbi.ru.nl/dssp.html

A: Where Can I Get The Secondary Structure Of A Protein?

How To Extract Secondary Structure From Pdb File ?