Question: How do I get the GDT_TS for a model
gravatar for Grombrindal
3.9 years ago by
Grombrindal0 wrote:

Hi everyone,

I'm trying to get the GDT score of some protein models I've made, but I haven't been able to find a working program to calculate it anywhere.

I've tried using the GDT_TS function of TM-score and the Pymol plugin psico, but both programs are not functioning as intended.

one problem is that the PDB files are missing the N-terminal, thus TM-score does not properly align the two structures.

If anyone knows a program or code that aligns two structures and returns the GDT score, that would be brilliant!


protein model • 1.3k views
ADD COMMENTlink modified 3.4 years ago by db420 • written 3.9 years ago by Grombrindal0
gravatar for db42
3.4 years ago by
db420 wrote:

Have you tried Zhanglab

ADD COMMENTlink written 3.4 years ago by db420
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1570 users visited in the last hour