Question: How do I get the GDT_TS for a model
0
gravatar for Grombrindal
3.9 years ago by
Shanghai
Grombrindal0 wrote:

Hi everyone,

I'm trying to get the GDT score of some protein models I've made, but I haven't been able to find a working program to calculate it anywhere.

I've tried using the GDT_TS function of TM-score and the Pymol plugin psico, but both programs are not functioning as intended.

one problem is that the PDB files are missing the N-terminal, thus TM-score does not properly align the two structures.

If anyone knows a program or code that aligns two structures and returns the GDT score, that would be brilliant!

Ben

protein model • 1.3k views
ADD COMMENTlink modified 3.4 years ago by db420 • written 3.9 years ago by Grombrindal0
0
gravatar for db42
3.4 years ago by
db420
db420 wrote:

Have you tried Zhanglab http://zhanglab.ccmb.med.umich.edu/TM-score/

ADD COMMENTlink written 3.4 years ago by db420
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