I am trying to install Athlates (July 31, 2014 version) from the instruction here: https://hpc.nih.gov/docs/Athlates.pdf on a computing cluster. However, I am running into issues with the corresponding bamtools. The Athlates makefile echoes the following command:
/usr/bin/g++ -O3 -I/n/home05/aewhatley/bamtools/include/ -L/n/home05/aewhatley/bamtools/lib *.cpp -o ../bin/typing -lpthread -lbamtools -lz
However, after installing bamtools (instructions here: https://github.com/pezmaster31/bamtools/wiki/Building-and-installing), there are no files present in the "/n/home05/aewhatley/bamtools/lib" folder that the command is trying to reach, and there is no "/n/home05/aewhatley/bamtools/include/" folder at all!
Has bamtools been changed since Athlates was created, and if so, how would I install it now? Thanks.