Making fasta files from gtf and reference genome
0
0
Entering edit mode
7.2 years ago
Olajucan • 0

Hi, I'm working on RNAseq data analysis.

I used HISAT2 and Stringtie to make reference transcriptome and gtf files.

Since my material is wheat, whose reference genome was released a month ago but annotation isn't completed yet,

I have to extract sequences of transcripts as fasta format to annotate them.

For that purpose, Is GFF utilities working on that?

Or, have any good ideas for annotating transcripts?

RNA-Seq • 2.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 3274 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6