Question: Free Genetic Genealogy Software
1
gravatar for dr.genetics
2.7 years ago by
dr.genetics60
dr.genetics60 wrote:

I am looking for a software that can take SNPs information as input (e.g. a 23andme genomic data file) and haplogroup as output, and ideally with an explanation of the haplogroup.

If such a software does not exist, references to algorithms + databases would be also highly appreciated!

snp genome • 1.1k views
ADD COMMENTlink modified 2.7 years ago by Petr Ponomarenko2.6k • written 2.7 years ago by dr.genetics60
3
gravatar for Petr Ponomarenko
2.7 years ago by
United States / Los Angeles / ALAPY.com
Petr Ponomarenko2.6k wrote:

for mtDNA you can use HaploGrep 2 http://haplogrep.uibk.ac.at/ or Phy-Mer https://github.com/MEEIBioinformaticsCenter/phy-mer

for Y chromosome yHaplo https://github.com/23andMe/yhaplo

ADD COMMENTlink written 2.7 years ago by Petr Ponomarenko2.6k

Awesome! Thanks much!

ADD REPLYlink written 2.7 years ago by dr.genetics60

yhaplo use isogg 2016 as the reference. Updating to 2018 is quite confusing for me. Is there any solution or other similar tool?

ADD REPLYlink written 14 months ago by J.F.Jiang760
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