Hello everyone, I have biological replicate, I have called peaks separately and to get final peaks I have used IDR and common peak with at least on overlap. I am getting very less number of peaks ~2000 out of ~40000. I am thinking of merge bam file of replicate and call peak on merge file. Can anyone please suggest me, It will be good Idea?
Note: There are other tool available for replicate data but I want to used PeakXus which dont have option of providing replicate.
Thank you In advance