Biological Replicate Chip-exo
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4.2 years ago

Hello everyone, I have biological replicate, I have called peaks separately and to get final peaks I have used IDR and common peak with at least on overlap. I am getting very less number of peaks ~2000 out of ~40000. I am thinking of merge bam file of replicate and call peak on merge file. Can anyone please suggest me, It will be good Idea?

Note: There are other tool available for replicate data but I want to used PeakXus which dont have option of providing replicate.

Thank you In advance

ChIP-Seq • 943 views

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