Searching for databases and repositories for AML rna seq data

Question

[abhideepdey95]

I am looking Rna seq data of AML patients. i have tried GDC portal and i only found data on only around 300 patients can someone suggest other databases or repositories that would give data on AML patients like the GDC portal?

[agata88]

Are you looking for raw fastq files?

Seems that SRA NCBI database have it.

https://www.ncbi.nlm.nih.gov/sra/?term=AML

Best, Agata

[abhideepdey95]

yea thank you this is really helpfull :)

[Denise CS]

Do you want the sequence or the downstream analysis on those sequences? If the former, it may be worth exploring ENA or ArrayExpress.

[abhideepdey95]

i was hoping for the downstream analysis, i will try ENA, i have tried array express already not alot available there

Answer 1

[Arnaud Ceol]

Although I would not complain about GDC having data about "only" 300 patients, you should have a look at https://repositive.io/, they collect information about data from many repositories.