Download custom track from UCSC genome browser to local

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7.2 years ago

sakshi • 0

Hello,

Has anyone tried to download a custom track from the UCSC genome browser? I would like to download it so I can visualize and align in IGV.

Any help would be appreciated.

Thank you

genome alignment • 5.5k views

ADD COMMENT • link 7.2 years ago by sakshi • 0

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what kind of track ? bed ? wig ? bam ?...

ADD REPLY • link 7.2 years ago by Pierre Lindenbaum 161k

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Some are bedgraphs and some are tdf or wig.

ADD REPLY • link 7.2 years ago by sakshi • 0

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It's a custom track, meaning you added it yourself?

ADD REPLY • link 7.2 years ago by WouterDeCoster 47k

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One of our collaborators uploaded it.

ADD REPLY • link 7.2 years ago by sakshi • 0

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Right click on the track
Select Show details for feature...
Go to [track name] track controls
Click on "Update custom track"
If you look in the text box under "Edit configuration", there should be a link right after bigDataurl= that would be the path to your custom track.

ADD REPLY • link 7.1 years ago by le2336 ▴ 70

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