Question: Download custom track from UCSC genome browser to local
0
gravatar for sakshi
2.3 years ago by
sakshi0
sakshi0 wrote:

Hello,

Has anyone tried to download a custom track from the UCSC genome browser? I would like to download it so I can visualize and align in IGV.

Any help would be appreciated.

Thank you

alignment genome • 1.8k views
ADD COMMENTlink written 2.3 years ago by sakshi0

what kind of track ? bed ? wig ? bam ?...

ADD REPLYlink written 2.3 years ago by Pierre Lindenbaum120k

Some are bedgraphs and some are tdf or wig.

ADD REPLYlink written 2.2 years ago by sakshi0

It's a custom track, meaning you added it yourself?

ADD REPLYlink written 2.2 years ago by WouterDeCoster39k

One of our collaborators uploaded it.

ADD REPLYlink written 2.2 years ago by sakshi0
  1. Right click on the track
  2. Select Show details for feature...
  3. Go to [track name] track controls
  4. Click on "Update custom track"
  5. If you look in the text box under "Edit configuration", there should be a link right after bigDataurl= that would be the path to your custom track.
ADD REPLYlink written 2.1 years ago by le233660
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