Question: Please Help with pathway database !!!
0
gravatar for evertoncruzsantos
2.7 years ago by
Brasil- Rio de janeiro- INCA
evertoncruzsantos0 wrote:

I'm studying proteomic profile of a plant versus pathogen ( resistant and susceptible) who doesn't have much similarity with models plants as A. thaliana. when i did the o search for orthologous in A. thaliana i lost to much information in my gene list associated in some conditions e.g. proteins associated with the susceptible in inoculated conditions. Do you know a pathway database where I could perform a search by fasta sequence (instead of gene name or codes), which can display interaction images such String based ?

fasta proteomic plant pathway gene • 675 views
ADD COMMENTlink modified 2.5 years ago by Biostar ♦♦ 20 • written 2.7 years ago by evertoncruzsantos0
2

Please use an informative title, please help is not very informative. In addition your question is lacking context:

  • Which species are we talking?
  • how did you infer proteome profile (mass spec? predicted proteins, something else?)
  • what kind of searches do you want to perform exactly (Blast, peptide mass fingerprinting, something else)?
  • what kind of interactions are you looking for (protein-protein, regulatory, pathways, smth. else?) and how should they be transferred to your plant?
ADD REPLYlink modified 2.7 years ago • written 2.7 years ago by Michael Dondrup46k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 737 users visited in the last hour