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Question: Please Help with pathway database !!!
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gravatar for evertoncruzsantos
3.9 years ago by
evertoncruzsantos • 0
Brasil- Rio de janeiro- INCA
evertoncruzsantos • 0 wrote:

I'm studying proteomic profile of a plant versus pathogen ( resistant and susceptible) who doesn't have much similarity with models plants as A. thaliana. when i did the o search for orthologous in A. thaliana i lost to much information in my gene list associated in some conditions e.g. proteins associated with the susceptible in inoculated conditions. Do you know a pathway database where I could perform a search by fasta sequence (instead of gene name or codes), which can display interaction images such String based ?
fasta proteomic plant pathway gene • 833 views
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modified 3.8 years ago by Biostar ♦♦ 20 • written 3.9 years ago by evertoncruzsantos • 0
2

Please use an informative title, please help is not very informative. In addition your question is lacking context:

  • Which species are we talking?
  • how did you infer proteome profile (mass spec? predicted proteins, something else?)
  • what kind of searches do you want to perform exactly (Blast, peptide mass fingerprinting, something else)?
  • what kind of interactions are you looking for (protein-protein, regulatory, pathways, smth. else?) and how should they be transferred to your plant?
ADD REPLY • link modified 3.9 years ago • written 3.9 years ago by Michael Dondrup ♦ 48k
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