Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Please Help with pathway database !!!
0
gravatar for evertoncruzsantos
3.4 years ago by
evertoncruzsantos • 0
Brasil- Rio de janeiro- INCA
evertoncruzsantos • 0 wrote:

I'm studying proteomic profile of a plant versus pathogen ( resistant and susceptible) who doesn't have much similarity with models plants as A. thaliana. when i did the o search for orthologous in A. thaliana i lost to much information in my gene list associated in some conditions e.g. proteins associated with the susceptible in inoculated conditions. Do you know a pathway database where I could perform a search by fasta sequence (instead of gene name or codes), which can display interaction images such String based ?
fasta proteomic plant pathway gene • 784 views
ADD COMMENT • link •
modified 3.2 years ago by Biostar ♦♦ 20 • written 3.4 years ago by evertoncruzsantos • 0
2

Please use an informative title, please help is not very informative. In addition your question is lacking context:

  • Which species are we talking?
  • how did you infer proteome profile (mass spec? predicted proteins, something else?)
  • what kind of searches do you want to perform exactly (Blast, peptide mass fingerprinting, something else)?
  • what kind of interactions are you looking for (protein-protein, regulatory, pathways, smth. else?) and how should they be transferred to your plant?
ADD REPLY • link modified 3.4 years ago • written 3.4 years ago by Michael Dondrup ♦ 47k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 832 users visited in the last hour