How to know the name of the pathways using KO numbers?
2
1
Entering edit mode
7.8 years ago
utkarsh.sood ▴ 40

Hi I have a list of about 2300 Ko numbers. How can I get the map of pathways using these KO numbers in minimum time.

Thanks!

KEGG pathway • 7.1k views
ADD COMMENT
0
Entering edit mode

Not sure what you mean by "map" but see if this has anything usable: How To Batch Grab All Ko (Kegg Ontology) Terms Associated With Each Kegg Pathway?

ADD REPLY
0
Entering edit mode
7.8 years ago
EagleEye 7.5k

Try this tool and see whether it serves your purpose, Gene Set Clustering based on Functional annotation (GeneSCF)

ADD COMMENT
0
Entering edit mode
7.2 years ago
biomonte ▴ 220

This can be solved by using KEGG Mapper – Reconstruct Pathway.

Just provide a gene list with your KO numbers.

ADD COMMENT

Login before adding your answer.

Traffic: 2414 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6